Our lab researches machine learning and its application to cheminformatics, bioinformatics, and computational sustainability. We are always interested in interesting new research areas both for applied and fundamental machine learning. Currently, we are particularly interested in reliability of machine learning models, adversarial machine learning, and bias, with applications in chemistry, epidemiology, and environmental research.

To learn more about our lab, check out our publications or read more about our research and projects.

You can join us as PhD student, Honours student, or other postgraduate student. You can also visit our lab as visiting researcher or student.

News

Social

  • enviPath was first published in 2016. Since then, we have introduced substantial functionality enhancements and updates. We’ve summarized these advancements in our latest update paper. Check it out here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11304562/
  • 🔁 Repeated @AI and Freshwater Modelling's Note
  • 🔁 Repeated @AI and Freshwater Modelling's Note
  • Wickerlab likes AI and Freshwater Modelling's status
  • Likes @AI and Freshwater Modelling's NoteExciting News from the #AI and #freshwater Modelling project at the University of Auckland! 🎓Master’s student Nicolas Samelson, supervised by Dr. Jörg Wicker and Dr. Katharina Dost, is breaking new ground in #environmentalmodeling. His thesis leverages #machinelearning to enhance process-based models, especially in scenarios with limited data.Learn more about this […]

Recent Publications

Journal Articles

Albrecht, Steffen; Broderick, David; Dost, Katharina; Cheung, Isabella; Nghiem, Nhung; Wu, Milton; Zhu, Johnny; Poonawala-Lohani, Nooriyan; Jamison, Sarah; Rasanathan, Damayanthi; Huang, Sue; Trenholme, Adrian; Stanley, Alicia; Lawrence, Shirley; Marsh, Samantha; Castelino, Lorraine; Paynter, Janine; Turner, Nikki; McIntyre, Peter; Riddle, Pat; Grant, Cameron; Dobbie, Gillian; Wicker, Jörg

Forecasting severe respiratory disease hospitalizations using machine learning algorithms Journal Article

In: BMC Medical Informatics and Decision Making, vol. 24, iss. 1, pp. 293, 2024, ISSN: 1472-6947.

Abstract | Links | BibTeX | Altmetric | PlumX

Hua, Yan Cathy; Denny, Paul; Wicker, Jörg; Taskova, Katerina

A Systematic Review of Aspect-based Sentiment Analysis: Domains, Methods, and Trends Journal Article

In: Artificial Intelligence Review, vol. 57, no. 11, pp. 296, 2024, ISSN: 1573-7462.

Abstract | Links | BibTeX | Altmetric | PlumX

Hafner, Jasmin; Lorsbach, Tim; Schmidt, Sebastian; Brydon, Liam; Dost, Katharina; Zhang, Kunyang; Fenner, Kathrin; Wicker, Jörg

Advancements in Biotransformation Pathway Prediction: Enhancements, Datasets, and Novel Functionalities in enviPath Journal Article

In: Journal of Cheminformatics, vol. 16, no. 1, pp. 93, 2024, ISSN: 1758-2946.

Abstract | Links | BibTeX | Altmetric | PlumX

Lyu, Jiachen; Dost, Katharina; Koh, Yun Sing; Wicker, Jörg

Regional Bias in Monolingual English Language Models Journal Article

In: Machine Learning, 2024, ISSN: 1573-0565.

Abstract | Links | BibTeX | Altmetric | PlumX

Long, Derek; Eade, Liam; Dost, Katharina; Meier-Menches, Samuel M; Goldstone, David C; Sullivan, Matthew P; Hartinger, Christian; Wicker, Jörg; Taskova, Katerina

AdductHunter: Identifying Protein-Metal Complex Adducts in Mass Spectra Journal Article

In: Journal of Cheminformatics, vol. 16, iss. 1, 2024, ISSN: 1758-2946.

Abstract | Links | BibTeX | Altmetric | PlumX

Miller, Catriona J; Golovina, Evgenija; Wicker, Jörg; Jacobson, Jessie C; O'Sullivan, Justin M

De novo network analysis reveals autism causal genes and developmental links to co-occurring traits Journal Article

In: Life Science Alliance, vol. 6, no. 10, 2023.

Abstract | Links | BibTeX | Altmetric | PlumX

Dost, Katharina; Pullar-Strecker, Zac; Brydon, Liam; Zhang, Kunyang; Hafner, Jasmin; Riddle, Pat; Wicker, Jörg

Combatting over-specialization bias in growing chemical databases Journal Article

In: Journal of Cheminformatics, vol. 15, iss. 1, pp. 53, 2023, ISSN: 1758-2946.

Abstract | Links | BibTeX | Altmetric | PlumX

Bensemann, Joshua; Cheena, Hasnain; Huang, David Tse Jung; Broadbent, Elizabeth; Williams, Jonathan; Wicker, Jörg

From What You See to What We Smell: Linking Human Emotions to Bio-markers in Breath Journal Article

In: IEEE Transactions on Affective Computing, pp. 1-13, 2023, ISSN: 1949-3045.

Abstract | Links | BibTeX | Altmetric | PlumX

Roeslin, Samuel; Ma, Quincy; Chigullapally, Pavan; Wicker, Jörg; Wotherspoon, Liam

Development of a Seismic Loss Prediction Model for Residential Buildings using Machine Learning – Christchurch, New Zealand Journal Article

In: Natural Hazards and Earth System Sciences, vol. 23, no. 3, pp. 1207-1226, 2023.

Abstract | Links | BibTeX | Altmetric | PlumX

Proceedings Articles

Park, Sean; Wicker, Jörg; Dost, Katharina

Resource-Constrained Binary Image Classification Proceedings Article Forthcoming

In: Discovery Science 2024, Forthcoming, (accepted).

Abstract | BibTeX

Graffeuille, Olivier; Koh, Yun Sing; Wicker, Jörg; Lehmann, Moritz

Remote Sensing for Water Quality: A Multi-Task, Metadata-Driven Hypernetwork Approach Proceedings Article

In: Larson, Kate (Ed.): Proceedings of the Thirty-Third International Joint Conference on Artificial Intelligence (IJCAI-24), pp. Pages 7287-7295, 2024, (AI for Good).

Abstract | Links | BibTeX | Altmetric | PlumX

Kim, Jonathan; Urschler, Martin; Riddle, Pat; Wicker, Jörg

Attacking the Loop: Adversarial Attacks on Graph-based Loop Closure Detection Proceedings Article

In: Proceedings of the 19th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications, pp. 90-97, 2024.

Abstract | Links | BibTeX | Altmetric | PlumX

Pullar-Strecker, Zac; Chang, Xinglong; Brydon, Liam; Ziogas, Ioannis; Dost, Katharina; Wicker, Jörg

Memento: Facilitating Effortless, Efficient, and Reliable ML Experiments Proceedings Article

In: Morales, Gianmarco De Francisci; Perlich, Claudia; Ruchansky, Natali; Kourtellis, Nicolas; Baralis, Elena; Bonchi, Francesco (Ed.): Machine Learning and Knowledge Discovery in Databases: Applied Data Science and Demo Track, pp. 310-314, Springer Nature Switzerland, Cham, 2023, ISBN: 978-3-031-43430-3.

Abstract | Links | BibTeX | Altmetric | PlumX

Chang, Luke; Dost, Katharina; Zhai, Kaiqi; Demontis, Ambra; Roli, Fabio; Dobbie, Gillian; Wicker, Jörg

BAARD: Blocking Adversarial Examples by Testing for Applicability, Reliability and Decidability Proceedings Article

In: Kashima, Hisashi; Ide, Tsuyoshi; Peng, Wen-Chih (Ed.): The 27th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), pp. 3-14, Springer Nature Switzerland, Cham, 2023, ISSN: 978-3-031-33374-3.

Abstract | Links | BibTeX | Altmetric | PlumX

Chen, Zeyu; Dost, Katharina; Zhu, Xuan; Chang, Xinglong; Dobbie, Gillian; Wicker, Jörg

Targeted Attacks on Time Series Forecasting Proceedings Article

In: Kashima, Hisashi; Ide, Tsuyoshi; Peng, Wen-Chih (Ed.): The 27th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), pp. 314-327, Springer Nature Switzerland, Cham, 2023, ISSN: 978-3-031-33383-5.

Abstract | Links | BibTeX | Altmetric | PlumX

Miscellaneous

Lorsbach, Tim; Wicker, Jörg

enviPath-python: v0.2.3 Miscellaneous

Zenedo, 2024.

Links | BibTeX | Altmetric | PlumX

Chang, Xinglong; Brydon, Liam; Wicker, Jörg

Memento: v1.1.1 Miscellaneous

Zenedo, 2024.

Links | BibTeX | Altmetric | PlumX

Wicker, Jörg; Krauter, Nicolas; Derstorff, Bettina; Stönner, Christof; Bourtsoukidis, Efstratios; Klüpfel, Thomas; Williams, Jonathan; Kramer, Stefan

Cinema Experiments 2013 Miscellaneous

2023.

Links | BibTeX | Altmetric | PlumX

Stönner, Christof; Edtbauer, Achim; Derstorff, Bettina; Bourtsoukidis, Efstratios; Klüpfel, Thomas; Wicker, Jörg; Williams, Jonathan

Cinema Experiments 2015 Miscellaneous

2023.

Links | BibTeX | Altmetric | PlumX

Unpublished

Brydon, Liam; Zhang, Kunyang; Dobbie, Gillian; Taskova, Katerina; Wicker, Jörg

Predictive Modeling of Biodegradation Pathways Using Transformer Architectures Unpublished Forthcoming

ResearchSquare, Forthcoming.

Abstract | Links | BibTeX | Altmetric | PlumX

Graffeuille, Olivier; Koh, Yun Sing; Wicker, Jörg; Lehmann, Moritz

Enabling Asymmetric Knowledge Transfer in Multi-Task Learning with Self-Auxiliaries Unpublished Forthcoming

Arxiv, Forthcoming.

Abstract | Links | BibTeX

Graffeuille, Olivier; Lehmann, Moritz; Allan, Matthew; Wicker, Jörg; Koh, Yun Sing

Lake by Lake, Globally: Enhancing Water Quality Remote Sensing with Multi-Task Learning Models Unpublished Forthcoming

Forthcoming, ISSN: 1556-5068.

Abstract | Links | BibTeX | Altmetric | PlumX

Dost, Katharina; Tam, Jason; Lorsbach, Tim; Schmidt, Sebastian; Wicker, Jörg

Defining Applicability Domain in Biodegradation Pathway Prediction Unpublished Forthcoming

Forthcoming.

Abstract | Links | BibTeX | Altmetric | PlumX

Chang, Xinglong; Dost, Katharina; Dobbie, Gillian; Wicker, Jörg

Poison is Not Traceless: Fully-Agnostic Detection of Poisoning Attacks Unpublished Forthcoming

Forthcoming.

Abstract | Links | BibTeX | Altmetric | PlumX

Chang, Xinglong; Dobbie, Gillian; Wicker, Jörg

Fast Adversarial Label-Flipping Attack on Tabular Data Unpublished Forthcoming

Forthcoming.

Abstract | Links | BibTeX | Altmetric | PlumX